All functions

call_cancer()

Call cancer from read positions

call_cancer_indels()

Call cancer from read positions

call_mutations()

Call mutations from read positions

correct_seq()

Correct a DNA Sequence Based on a CIGAR String

dreams_cc()

Call cancer from read positions in bam-file

dreams_cc_indels()

Cancer Detection in Indels Using DREAMS

dreams_vc()

Call mutations in a bam-file

dreams_vc_indels()

Variant Calling in Indels

dreams_vc_parallel()

Call mutations in a bam-file

get_indel_info()

Extract Indel Information from CIGAR String and Genomic Position

get_indels_start_positions()

Extract Start Positions of Indels from a CIGAR String

get_training_data()

Extract training data from BAM files

get_training_data_indels()

Extract training data from BAM files (indel)

train_dreams_model()

Train error model

train_dreams_model_indels()

Train error model